7ZE0
Solution structure of the PulM C-terminal domain from Klebsiella oxytoca
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
2 | 2D 1H-13C HMQC | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
3 | 3D CBCA(CO)NH | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
17 | 3D HNCACB | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
5 | 3D C(CO)NH | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
10 | 3D HNCO | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
18 | 3D HNCACO | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
6 | 3D H(CCO)NH | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
12 | 3D 1H-15N NOESY | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
11 | 3D 1H-13C NOESY | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
15 | 3D 13C/15N-filtered NOESY | 400 uM 50% [13C, 15N] and 50% [12C, 14N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
16 | 2D HBCBCGCDHD | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
19 | 2D HBCBCGCDCEHE | 400 uM [U-100% 13C; U-100% 15N] PulM, 50 mM Hepes, 50 mM sodium chloride | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
2 | Bruker | AVANCE NEO | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | structure calculation | ARIA | Linge, O'Donoghue and Nilges | |
3 | chemical shift assignment | CcpNmr Analysis | CCPN | |
4 | peak picking | CcpNmr Analysis | CCPN | |
5 | processing | TopSpin | Bruker Biospin |