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Crystal structure of Talin R7R8 domains with Caskin-2 LD-peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FZT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.1 M bis-Tris propane pH 7.0, 0.1 M NaBr and 24% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.03 39.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.656 α = 90 b = 61.348 β = 90 c = 98.18 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.72 49.09 99.8 0.168 0.175 0.049 0.998 9.5 12.9 8032
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.72 2.85 99 2.599 2.7 0.722 0.605 1.3 13.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5fzt 2.72 49.09 7580 424 99.78 0.24381 0.24226 0.2795 0.2694 0.3045 RANDOM 86.632
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 -2.54 3.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.105 r_dihedral_angle_3_deg 12.991 r_dihedral_angle_4_deg 9.634 r_long_range_B_refined 6.063 r_long_range_B_other 6.063 r_dihedral_angle_1_deg 4.04 r_scangle_other 2.491 r_mcangle_it 2.303 r_mcangle_other 2.302 r_scbond_other 1.469
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.105 r_dihedral_angle_3_deg 12.991 r_dihedral_angle_4_deg 9.634 r_long_range_B_refined 6.063 r_long_range_B_other 6.063 r_dihedral_angle_1_deg 4.04 r_scangle_other 2.491 r_mcangle_it 2.303 r_mcangle_other 2.302 r_scbond_other 1.469 r_scbond_it 1.467 r_mcbond_it 1.365 r_mcbond_other 1.365 r_angle_other_deg 0.942 r_angle_refined_deg 0.807 r_chiral_restr 0.044 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2382 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing