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Crystal structure of CYP106A1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4YT3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.3 M LiSO4, 30 % PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.3 46.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.69 α = 95.36 b = 82.87 β = 90 c = 84.86 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.97916 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 25.92 88.9 0.066 0.079 0.043 0.996 7.05 3.3 168988
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 0.92
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4YT3 1.7 25.82 160539 8441 88.88 0.1707 0.1689 0.2059 0.2157 RANDOM 22.634
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.68 0.04 0.23 -0.83 -1.32 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.879 r_dihedral_angle_4_deg 16.391 r_dihedral_angle_3_deg 13.781 r_dihedral_angle_1_deg 6.695 r_angle_refined_deg 1.662 r_angle_other_deg 1.483 r_chiral_restr 0.089 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.879 r_dihedral_angle_4_deg 16.391 r_dihedral_angle_3_deg 13.781 r_dihedral_angle_1_deg 6.695 r_angle_refined_deg 1.662 r_angle_other_deg 1.483 r_chiral_restr 0.089 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12597 Nucleic Acid Atoms Solvent Atoms 1022 Heterogen Atoms 285
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling MOLREP phasing