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Less crystallisable" IgG1 Fc fragment (E382S variant)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3AVE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294.15 0.2 M ammonium sulphate, 0.1 M Tris (pH 7.5), 25 % w/v PEG 8000
Crystal Properties Matthews coefficient Solvent content 3.35 63.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.78 α = 90 b = 106.78 β = 90 c = 104.011 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2021-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.9677 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.04 47.543 99.7 0.034 0.048 0.034 15.2 1.9 13476
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.04 3.25 98.4 1.117 1.58 1.117 0.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3AVE 3.044 47.543 13476 654 99.682 0.198 0.1966 0.2027 0.2179 0.227 136.227
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.364 0.682 1.364 -4.424
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.999 r_dihedral_angle_3_deg 13.075 r_lrange_it 7.004 r_lrange_other 7.001 r_dihedral_angle_1_deg 5.839 r_scangle_it 2.783 r_scangle_other 2.778 r_mcangle_it 2.755 r_mcangle_other 2.754 r_dihedral_angle_2_deg 2.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.999 r_dihedral_angle_3_deg 13.075 r_lrange_it 7.004 r_lrange_other 7.001 r_dihedral_angle_1_deg 5.839 r_scangle_it 2.783 r_scangle_other 2.778 r_mcangle_it 2.755 r_mcangle_other 2.754 r_dihedral_angle_2_deg 2.323 r_mcbond_it 1.586 r_mcbond_other 1.585 r_scbond_it 1.57 r_scbond_other 1.562 r_angle_refined_deg 0.797 r_angle_other_deg 0.308 r_symmetry_nbd_other 0.175 r_nbd_other 0.174 r_nbd_refined 0.169 r_nbtor_refined 0.165 r_symmetry_nbd_refined 0.143 r_ncsr_local_group_1 0.121 r_xyhbond_nbd_refined 0.101 r_symmetry_nbtor_other 0.08 r_symmetry_xyhbond_nbd_refined 0.073 r_chiral_restr 0.039 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3331 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 189
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing