8A48

Less crystallisable" IgG1 Fc fragment (E382S variant)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5294.150.2 M ammonium sulphate, 0.1 M Tris (pH 7.5), 25 % w/v PEG 8000
Crystal Properties
Matthews coefficientSolvent content
3.3563.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106.78α = 90
b = 106.78β = 90
c = 104.011γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 4M2021-02-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE MASSIF-30.9677ESRFMASSIF-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.0447.54399.70.0340.0480.03415.21.913476
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.043.2598.41.1171.581.1170.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3AVE3.04447.5431347665499.6820.1980.19660.2179136.227
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.3640.6821.364-4.424
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg13.999
r_dihedral_angle_3_deg13.075
r_lrange_it7.004
r_lrange_other7.001
r_dihedral_angle_1_deg5.839
r_scangle_it2.783
r_scangle_other2.778
r_mcangle_it2.755
r_mcangle_other2.754
r_dihedral_angle_2_deg2.323
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg13.999
r_dihedral_angle_3_deg13.075
r_lrange_it7.004
r_lrange_other7.001
r_dihedral_angle_1_deg5.839
r_scangle_it2.783
r_scangle_other2.778
r_mcangle_it2.755
r_mcangle_other2.754
r_dihedral_angle_2_deg2.323
r_mcbond_it1.586
r_mcbond_other1.585
r_scbond_it1.57
r_scbond_other1.562
r_angle_refined_deg0.797
r_angle_other_deg0.308
r_symmetry_nbd_other0.175
r_nbd_other0.174
r_nbd_refined0.169
r_nbtor_refined0.165
r_symmetry_nbd_refined0.143
r_ncsr_local_group_10.121
r_xyhbond_nbd_refined0.101
r_symmetry_nbtor_other0.08
r_symmetry_xyhbond_nbd_refined0.073
r_chiral_restr0.039
r_bond_refined_d0.003
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3331
Nucleic Acid Atoms
Solvent Atoms29
Heterogen Atoms189

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing