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Small molecular stabilizer for ERalpha and 14-3-3 (1080294)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JC3 4JC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.095 M HEPES (pH 7.1), PEG400 (26% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties Matthews coefficient Solvent content 2.64 53.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.876 α = 90 b = 112.352 β = 90 c = 62.344 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.033200 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 45.42 99.7 0.999 23.6 13.4 46273
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.52 0.957
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JC3 1.5 45.42 43981 2273 99.56 0.14693 0.14564 0.1436 0.17195 0.174 RANDOM 17.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.64 0.07 -1.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.647 r_dihedral_angle_4_deg 15.734 r_dihedral_angle_3_deg 11.102 r_dihedral_angle_1_deg 4.512 r_long_range_B_refined 2.553 r_long_range_B_other 2.283 r_scangle_other 1.799 r_rigid_bond_restr 1.487 r_mcangle_it 1.421 r_mcangle_other 1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.647 r_dihedral_angle_4_deg 15.734 r_dihedral_angle_3_deg 11.102 r_dihedral_angle_1_deg 4.512 r_long_range_B_refined 2.553 r_long_range_B_other 2.283 r_scangle_other 1.799 r_rigid_bond_restr 1.487 r_mcangle_it 1.421 r_mcangle_other 1.42 r_scbond_it 1.409 r_scbond_other 1.408 r_angle_refined_deg 1.298 r_angle_other_deg 1.27 r_mcbond_it 0.98 r_mcbond_other 0.98 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1899 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DIALS data reduction Aimless data scaling MOLREP phasing