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Small molecular stabilizer for ERalpha and 14-3-3sigma (1074378)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JC3 4JC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES (pH 7.1), PEG400 (24% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties Matthews coefficient Solvent content 2.69 54.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.979 α = 90 b = 112.338 β = 90 c = 62.521 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.033220 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 45.5 99.8 1 49.7 6.9 57003
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 0.988
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JC3 1.4 45.5 54084 2900 99.8 0.1387 0.13728 0.1367 0.16535 0.1652 RANDOM 16.207
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.25 -0.86 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.962 r_dihedral_angle_4_deg 15.349 r_dihedral_angle_3_deg 10.695 r_dihedral_angle_1_deg 4.544 r_long_range_B_refined 3.294 r_long_range_B_other 2.918 r_scangle_other 2.416 r_rigid_bond_restr 2.195 r_angle_other_deg 2.135 r_scbond_it 1.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.962 r_dihedral_angle_4_deg 15.349 r_dihedral_angle_3_deg 10.695 r_dihedral_angle_1_deg 4.544 r_long_range_B_refined 3.294 r_long_range_B_other 2.918 r_scangle_other 2.416 r_rigid_bond_restr 2.195 r_angle_other_deg 2.135 r_scbond_it 1.867 r_scbond_other 1.867 r_angle_refined_deg 1.609 r_mcangle_it 1.583 r_mcangle_other 1.583 r_mcbond_it 1.167 r_mcbond_other 1.167 r_chiral_restr 0.105 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1899 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling MOLREP phasing