☰ Navigation Tabs
Structure of Mpro from SARS-CoV-2 in complex with FGA147
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7K3T 7K3T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 295 0.1 M TRIS-HCl at pH 8.5 containing 20% PEG 2000 MME and 10 mM NiCl2
Crystal Properties Matthews coefficient Solvent content 2.2 44.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.721 α = 90 b = 62.661 β = 90 c = 106.128 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.978948888602 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 41.246 99.4 0.999 21.94 12.9 38449
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.62 1.68 97.1 0.0594 0.99 12.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7K3T 1.621 41.246 38448 1840 99.403 0.194 0.1914 0.2011 0.2439 0.2529 32.708
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.122 1.835 -0.713
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.542 r_dihedral_angle_3_deg 15.5 r_dihedral_angle_2_deg 9.683 r_lrange_it 7.507 r_lrange_other 7.493 r_dihedral_angle_1_deg 7.104 r_scangle_it 6.211 r_scangle_other 6.21 r_mcangle_it 4.322 r_mcangle_other 4.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.542 r_dihedral_angle_3_deg 15.5 r_dihedral_angle_2_deg 9.683 r_lrange_it 7.507 r_lrange_other 7.493 r_dihedral_angle_1_deg 7.104 r_scangle_it 6.211 r_scangle_other 6.21 r_mcangle_it 4.322 r_mcangle_other 4.322 r_scbond_it 4.193 r_scbond_other 4.192 r_mcbond_it 3.047 r_mcbond_other 3.044 r_angle_refined_deg 1.86 r_symmetry_nbd_refined 1.041 r_angle_other_deg 1.037 r_nbd_other 0.572 r_symmetry_xyhbond_nbd_refined 0.233 r_nbd_refined 0.231 r_symmetry_nbd_other 0.217 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.089 r_symmetry_nbtor_other 0.081 r_bond_refined_d 0.017 r_gen_planes_other 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2368 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing