☰ Navigation Tabs
COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR 3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Other in house model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1M citrate buffer pH 4.5 and 20-30% PEG4000
Crystal Properties Matthews coefficient Solvent content 2.2 44.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.761 α = 90 b = 59.742 β = 90 c = 66.929 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.97887 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 44.59 99.3 0.082 0.998 15.76 6.9 26387
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.75 0.742 0.752 2.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT in house model 1.7 44.588 26386 884 99.334 0.155 0.1539 0.1669 0.1736 0.186 29.097
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.006 -0.189 -0.816
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.452 r_dihedral_angle_4_deg 19.833 r_dihedral_angle_3_deg 13.016 r_dihedral_angle_1_deg 7.407 r_lrange_it 5.568 r_lrange_other 5.436 r_scangle_it 3.031 r_scangle_other 3.03 r_scbond_it 1.921 r_scbond_other 1.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.452 r_dihedral_angle_4_deg 19.833 r_dihedral_angle_3_deg 13.016 r_dihedral_angle_1_deg 7.407 r_lrange_it 5.568 r_lrange_other 5.436 r_scangle_it 3.031 r_scangle_other 3.03 r_scbond_it 1.921 r_scbond_other 1.92 r_mcangle_it 1.83 r_mcangle_other 1.829 r_angle_refined_deg 1.539 r_angle_other_deg 1.429 r_mcbond_it 1.192 r_mcbond_other 1.183 r_symmetry_nbd_refined 0.273 r_nbd_refined 0.2 r_nbd_other 0.189 r_symmetry_nbd_other 0.188 r_nbtor_refined 0.17 r_symmetry_xyhbond_nbd_refined 0.168 r_xyhbond_nbd_refined 0.153 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.07 r_chiral_restr_other 0.044 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1875 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing