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FOXK1-ELF1-heterodimer bound to DNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C6Y FOXK1A experimental model PDB 3JTG ELF3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 PEG MME 3350, PEG 200, magnesium chloride, HEPES
Crystal Properties Matthews coefficient Solvent content 2.23 50.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.181 α = 90 b = 105.868 β = 112.94 c = 68.194 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2021-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.6199 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.69 49.49 99.8 0.2 0.232 0.116 0.991 3.9 3.9 23997
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.69 2.84 99.2 1.999 2.31 1.147 0.399 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.69 40 21947 1218 96.43 0.27352 0.27053 0.283 0.3236 0.3276 RANDOM 113.019
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.17 11.15 -13.65 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.89 r_dihedral_angle_3_deg 22.983 r_dihedral_angle_4_deg 17.97 r_long_range_B_refined 16.991 r_long_range_B_other 16.991 r_mcangle_it 13.956 r_mcangle_other 13.954 r_scangle_other 12.433 r_mcbond_it 8.88 r_mcbond_other 8.874
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.89 r_dihedral_angle_3_deg 22.983 r_dihedral_angle_4_deg 17.97 r_long_range_B_refined 16.991 r_long_range_B_other 16.991 r_mcangle_it 13.956 r_mcangle_other 13.954 r_scangle_other 12.433 r_mcbond_it 8.88 r_mcbond_other 8.874 r_scbond_it 7.755 r_scbond_other 7.755 r_dihedral_angle_1_deg 7.291 r_angle_refined_deg 1.693 r_angle_other_deg 1.115 r_chiral_restr 0.161 r_gen_planes_refined 0.008 r_bond_refined_d 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4600 Nucleic Acid Atoms 1408 Solvent Atoms 34 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing