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14-3-3 in complex with Pyrin pS208
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.19 M CaCl2, 5% glycerol, 26% PEG 400, 0.095 M HEPES, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.51 50.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.959 α = 90 b = 111.538 β = 90 c = 62.659 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2020-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.03320 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 41.66 99.8 0.999 27 4.3 15990
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.15 0.995 15.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.15 41.659 15975 860 99.856 0.161 0.1587 0.1675 0.2099 0.2142 19.066
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.627 0.123 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.692 r_dihedral_angle_3_deg 14.1 r_dihedral_angle_4_deg 13.848 r_lrange_it 5.991 r_lrange_other 5.956 r_dihedral_angle_1_deg 5.302 r_scangle_other 4.049 r_scangle_it 4.048 r_mcangle_it 3.177 r_mcangle_other 3.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.692 r_dihedral_angle_3_deg 14.1 r_dihedral_angle_4_deg 13.848 r_lrange_it 5.991 r_lrange_other 5.956 r_dihedral_angle_1_deg 5.302 r_scangle_other 4.049 r_scangle_it 4.048 r_mcangle_it 3.177 r_mcangle_other 3.177 r_scbond_it 2.533 r_scbond_other 2.531 r_mcbond_it 1.988 r_mcbond_other 1.986 r_angle_refined_deg 1.532 r_angle_other_deg 1.447 r_nbd_refined 0.21 r_symmetry_nbd_refined 0.187 r_xyhbond_nbd_refined 0.185 r_symmetry_nbd_other 0.163 r_nbtor_refined 0.161 r_symmetry_xyhbond_nbd_refined 0.148 r_nbd_other 0.144 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1890 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling PHASER phasing