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The Fk1 domain of FKBP51 in complex with 2-(3-((R)-1-(((S)-1-((S)-2-(5-chlorothiophen-2-yl)propanoyl)piperidine-2-carbonyl)oxy)-3-(3,4-dimethoxyphenyl)propyl)phenoxy)acetic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 22% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate
Crystal Properties Matthews coefficient Solvent content 2.57 52.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.651 α = 90 b = 50.882 β = 90 c = 58.103 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 48.65 99.9 0.054 0.059 0.024 0.999 18.4 10.9 21573
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.58 1.218 1.353 0.581 0.809 10
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4TW7 1.55 38.308 21412 1064 99.364 0.217 0.2161 0.2116 0.2389 0.2362 32.336
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.935 5.595 -3.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.062 r_dihedral_angle_3_deg 13.475 r_dihedral_angle_1_deg 8.545 r_lrange_it 6.036 r_lrange_other 5.987 r_dihedral_angle_2_deg 4.202 r_scangle_it 3.492 r_scangle_other 3.491 r_mcangle_it 2.527 r_mcangle_other 2.525
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.062 r_dihedral_angle_3_deg 13.475 r_dihedral_angle_1_deg 8.545 r_lrange_it 6.036 r_lrange_other 5.987 r_dihedral_angle_2_deg 4.202 r_scangle_it 3.492 r_scangle_other 3.491 r_mcangle_it 2.527 r_mcangle_other 2.525 r_scbond_it 2.196 r_scbond_other 2.194 r_angle_refined_deg 1.727 r_mcbond_it 1.678 r_mcbond_other 1.678 r_chiral_restr_other 0.761 r_angle_other_deg 0.593 r_nbd_refined 0.206 r_symmetry_nbd_other 0.189 r_nbtor_refined 0.173 r_nbd_other 0.146 r_xyhbond_nbd_refined 0.136 r_symmetry_nbd_refined 0.082 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.068 r_symmetry_xyhbond_nbd_refined 0.031 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 939 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing