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The FK1 domain of FKBP51 in complex with (1S,5S,6R)-10-((S)-3,5-dichloro-N-methylphenylsulfonimidoyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OBK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 30% PEG3350, 0.2 M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.34 47.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.35 α = 90 b = 54.651 β = 90 c = 56.65 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.01 42.35 98.4 0.029 0.034 0.017 1 25.4 7.1 68384
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.01 1.03 0.62 0.723 0.368 0.836 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.01 39.363 68326 3314 98.146 0.15 0.149 0.148 0.1661 0.1654 11.947
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.472 -0.44 -0.032
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.406 r_dihedral_angle_3_deg 12.221 r_rigid_bond_restr 8.148 r_dihedral_angle_1_deg 7.395 r_dihedral_angle_2_deg 4.901 r_mcangle_it 4.365 r_mcangle_other 4.362 r_lrange_it 3.762 r_mcbond_other 3.73 r_mcbond_it 3.728
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.406 r_dihedral_angle_3_deg 12.221 r_rigid_bond_restr 8.148 r_dihedral_angle_1_deg 7.395 r_dihedral_angle_2_deg 4.901 r_mcangle_it 4.365 r_mcangle_other 4.362 r_lrange_it 3.762 r_mcbond_other 3.73 r_mcbond_it 3.728 r_lrange_other 3.464 r_scangle_it 2.959 r_scangle_other 2.957 r_scbond_it 2.869 r_scbond_other 2.866 r_chiral_restr_other 1.985 r_angle_refined_deg 1.683 r_angle_other_deg 0.812 r_xyhbond_nbd_refined 0.221 r_symmetry_nbd_other 0.209 r_nbd_refined 0.205 r_symmetry_xyhbond_nbd_refined 0.188 r_nbtor_refined 0.179 r_nbd_other 0.169 r_chiral_restr 0.135 r_symmetry_nbtor_other 0.085 r_symmetry_nbd_refined 0.063 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 950 Nucleic Acid Atoms Solvent Atoms 224 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing