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Crystal structure of an 8-repeat consensus TPR superhelix with Tb
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FO7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 292 TbCl3, 5 mM
100 mM Tris-HCl
30% MPD
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.769 α = 90 b = 57.485 β = 90 c = 76.302 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 1.650042 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.782 45.913 99.5 0.152 0.159 0.046 0.993 13.1 11.9 18929
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.782 1.812 97.6 1.72 1.808 0.55 0.628 1.9 10.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.782 45.91 17992 935 99.5 0.17459 0.17328 0.19767 0.2156 RANDOM 34.466
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.05 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.61 r_dihedral_angle_4_deg 21.292 r_dihedral_angle_3_deg 15.334 r_long_range_B_refined 8.541 r_long_range_B_other 8.527 r_scangle_other 7.494 r_dihedral_angle_1_deg 5.237 r_scbond_it 4.916 r_scbond_other 4.913 r_mcangle_other 3.449
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.61 r_dihedral_angle_4_deg 21.292 r_dihedral_angle_3_deg 15.334 r_long_range_B_refined 8.541 r_long_range_B_other 8.527 r_scangle_other 7.494 r_dihedral_angle_1_deg 5.237 r_scbond_it 4.916 r_scbond_other 4.913 r_mcangle_other 3.449 r_mcangle_it 3.448 r_mcbond_it 2.844 r_mcbond_other 2.804 r_angle_refined_deg 1.634 r_angle_other_deg 1.539 r_chiral_restr 0.104 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1148 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement SCALA data scaling autoPROC data reduction MOLREP phasing