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TCR TG6 in complex with Ld-HF10
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LD9 1LD9, 3TO4 experimental model PDB 3TO4 1LD9, 3TO4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 11 % w/v PEG 8000, 0.1 M MES 6.0, 0.24 M Ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.92 57.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.963 α = 90 b = 89.963 β = 90 c = 105.982 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 90 99.8 0.03 26.6 6.4 29168
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 0.29
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1LD9, 3TO4 2.501 45.022 29168 1493 99.839 0.172 0.1688 0.1743 0.222 0.22 65.211
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.251 -0.251 0.501
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.114 r_dihedral_angle_4_deg 21.23 r_dihedral_angle_3_deg 19.361 r_lrange_it 10.022 r_lrange_other 10.021 r_dihedral_angle_1_deg 8.557 r_scangle_it 7.36 r_scangle_other 7.359 r_mcangle_it 6.184 r_mcangle_other 6.183
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.114 r_dihedral_angle_4_deg 21.23 r_dihedral_angle_3_deg 19.361 r_lrange_it 10.022 r_lrange_other 10.021 r_dihedral_angle_1_deg 8.557 r_scangle_it 7.36 r_scangle_other 7.359 r_mcangle_it 6.184 r_mcangle_other 6.183 r_scbond_it 4.996 r_scbond_other 4.854 r_mcbond_it 4.167 r_mcbond_other 4.166 r_angle_refined_deg 1.892 r_angle_other_deg 1.372 r_symmetry_nbd_refined 0.262 r_symmetry_xyhbond_nbd_refined 0.235 r_nbd_refined 0.21 r_symmetry_nbd_other 0.205 r_nbd_other 0.192 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.168 r_symmetry_nbtor_other 0.088 r_chiral_restr 0.087 r_symmetry_xyhbond_nbd_other 0.063 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5108 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing