☰ Navigation Tabs
Lysozyme Anomalous Dataset at 240 K and 7.1 keV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
Crystal Properties Matthews coefficient Solvent content 1.92 34.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.106 α = 90 b = 77.106 β = 90 c = 37.042 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 240 PIXEL DECTRIS EIGER X 16M 2020-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 1.7462 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 37.04 100 0.053 0.018 0.999 35.4 15.8 9246 27.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 100 0.169 0.067 0.993 12.6 12.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.9 34.507 9245 478 99.957 0.14 0.1368 0.1502 0.1981 0.2066 21.646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.469 -0.469 0.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.223 r_dihedral_angle_3_deg 13.775 r_dihedral_angle_2_deg 10.913 r_lrange_it 7.601 r_lrange_other 7.497 r_scangle_it 6.746 r_scangle_other 6.742 r_dihedral_angle_1_deg 6.63 r_scbond_it 4.993 r_scbond_other 4.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.223 r_dihedral_angle_3_deg 13.775 r_dihedral_angle_2_deg 10.913 r_lrange_it 7.601 r_lrange_other 7.497 r_scangle_it 6.746 r_scangle_other 6.742 r_dihedral_angle_1_deg 6.63 r_scbond_it 4.993 r_scbond_other 4.99 r_mcangle_other 3.879 r_mcangle_it 3.866 r_mcbond_it 3.451 r_mcbond_other 3.434 r_angle_refined_deg 1.475 r_angle_other_deg 0.549 r_xyhbond_nbd_refined 0.377 r_nbd_refined 0.241 r_symmetry_nbd_other 0.199 r_nbtor_refined 0.179 r_symmetry_nbd_refined 0.177 r_metal_ion_refined 0.165 r_symmetry_xyhbond_nbd_refined 0.148 r_nbd_other 0.114 r_chiral_restr 0.082 r_symmetry_nbtor_other 0.08 r_gen_planes_refined 0.008 r_bond_refined_d 0.007 r_symmetry_xyhbond_nbd_other 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXCD phasing