X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5ILE 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE2982.3 - 2.6 M Ammonium Sulfate, 100 mM Tris-HCl, 1 mm EDTA, pH 7.4
Crystal Properties
Matthews coefficientSolvent content
3.1160.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.577α = 90
b = 90.577β = 90
c = 45.404γ = 120
Symmetry
Space GroupP 6

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray200PIXELDECTRIS PILATUS 200K2017-10-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.850.0197.870.14522.286.119658
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8640.6380.3010.67

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5ile1.8501859392997.870.19830.19670.2298RANDOM15.777
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.080.040.08-0.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.081
r_dihedral_angle_4_deg22.009
r_dihedral_angle_3_deg14.505
r_dihedral_angle_1_deg5.313
r_angle_refined_deg2.107
r_angle_other_deg1.099
r_chiral_restr0.139
r_bond_refined_d0.023
r_gen_planes_refined0.011
r_gen_planes_other0.006
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.081
r_dihedral_angle_4_deg22.009
r_dihedral_angle_3_deg14.505
r_dihedral_angle_1_deg5.313
r_angle_refined_deg2.107
r_angle_other_deg1.099
r_chiral_restr0.139
r_bond_refined_d0.023
r_gen_planes_refined0.011
r_gen_planes_other0.006
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1212
Nucleic Acid Atoms
Solvent Atoms132
Heterogen Atoms63

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing