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The Crystal Structure of CDK3 and CyclinE1 Complex with Dinaciclib from Biortus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.6M MgSO4, 0.1M MES pH 6.60
Crystal Properties Matthews coefficient Solvent content 2.73 54.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.027 α = 90 b = 155.027 β = 90 c = 76.788 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2022-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.95372 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 44.75 99.1 0.976 7.3 4 27244
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.9 99.1 0.577 2.1 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.75 42.371 27237 1385 98.846 0.164 0.1614 0.2234 0.215 35.299
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.571 0.285 0.571 -1.851
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.849 r_lrange_other 14.24 r_lrange_it 14.227 r_dihedral_angle_6_deg 12.64 r_scangle_it 10.18 r_scangle_other 10.179 r_mcangle_it 7.939 r_mcangle_other 7.939 r_dihedral_angle_2_deg 7.838 r_scbond_it 6.865
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.849 r_lrange_other 14.24 r_lrange_it 14.227 r_dihedral_angle_6_deg 12.64 r_scangle_it 10.18 r_scangle_other 10.179 r_mcangle_it 7.939 r_mcangle_other 7.939 r_dihedral_angle_2_deg 7.838 r_scbond_it 6.865 r_scbond_other 6.864 r_dihedral_angle_1_deg 5.778 r_mcbond_it 5.273 r_mcbond_other 5.273 r_angle_refined_deg 1.129 r_angle_other_deg 0.361 r_nbd_refined 0.194 r_symmetry_nbd_other 0.191 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.163 r_symmetry_nbd_refined 0.162 r_nbd_other 0.156 r_symmetry_xyhbond_nbd_refined 0.13 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.05 r_symmetry_xyhbond_nbd_other 0.041 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4577 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing