☰ Navigation Tabs
Crystal structure of apo-form of malonyl-CoA reductase C-domain from Chloroflexus aurantiacus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293.15 0.1 M ammonium tartrate, 0.1 M Tris-Cl
Crystal Properties Matthews coefficient Solvent content 3.11 60.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.788 α = 90 b = 140.355 β = 97.74 c = 73.859 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2016-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.5 0.069 13.9 2.1 62767
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 95.6 0.266 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 26.67 59137 3234 99.37 0.15806 0.15643 0.1684 0.1881 0.1992 RANDOM 29.982
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.55 -1.08 -0.84 -1.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.414 r_dihedral_angle_3_deg 13.812 r_dihedral_angle_4_deg 13.716 r_long_range_B_refined 7.917 r_long_range_B_other 7.883 r_scangle_other 6.481 r_dihedral_angle_1_deg 6.309 r_scbond_it 4.244 r_scbond_other 4.243 r_mcangle_it 3.464
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.414 r_dihedral_angle_3_deg 13.812 r_dihedral_angle_4_deg 13.716 r_long_range_B_refined 7.917 r_long_range_B_other 7.883 r_scangle_other 6.481 r_dihedral_angle_1_deg 6.309 r_scbond_it 4.244 r_scbond_other 4.243 r_mcangle_it 3.464 r_mcangle_other 3.463 r_mcbond_it 2.692 r_mcbond_other 2.691 r_angle_refined_deg 1.679 r_angle_other_deg 1.452 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4996 Nucleic Acid Atoms Solvent Atoms 453 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling HKL-2000 data reduction SOLVE phasing