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Crystal structure of CtPL-H210S/F214I mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7CWQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.1 M potassium bromide; 33% w/v PEG 2000 MME
Crystal Properties Matthews coefficient Solvent content 2.28 45.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.356 α = 90 b = 115.356 β = 90 c = 94.713 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON III 2021-05-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 LIQUID ANODE BRUKER METALJET 1.34138
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 37.79 100 0.1379 9.86 8.49 44073
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 2.11 100 0.5926 2.04 6.53
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7CWQ 2.08 37.79 41816 2226 99.96 0.20289 0.20021 0.2075 0.25426 0.257 RANDOM 25.617
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 0.28 0.56 -1.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.662 r_dihedral_angle_4_deg 17.069 r_dihedral_angle_3_deg 14.849 r_dihedral_angle_1_deg 7.411 r_long_range_B_refined 5.853 r_long_range_B_other 5.792 r_scangle_other 3.786 r_mcangle_it 2.861 r_mcangle_other 2.861 r_scbond_it 2.447
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.662 r_dihedral_angle_4_deg 17.069 r_dihedral_angle_3_deg 14.849 r_dihedral_angle_1_deg 7.411 r_long_range_B_refined 5.853 r_long_range_B_other 5.792 r_scangle_other 3.786 r_mcangle_it 2.861 r_mcangle_other 2.861 r_scbond_it 2.447 r_scbond_other 2.447 r_mcbond_it 1.92 r_mcbond_other 1.92 r_angle_refined_deg 1.595 r_angle_other_deg 1.378 r_chiral_restr 0.072 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4118 Nucleic Acid Atoms Solvent Atoms 512 Heterogen Atoms 30
Software Software Software Name Purpose SAINT data reduction SAINT data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing