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Inactive mutant of CtPL-H210S/F214I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7CWQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 20% PEG 2000 MME, 0.2 M ammonium citrate tribasic pH7.0, 0.1 M imidazole pH7.0
Crystal Properties Matthews coefficient Solvent content 2.28 45.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.316 α = 90 b = 153.881 β = 90 c = 52.996 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON III 2021-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 LIQUID ANODE BRUKER METALJET 1.34138
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 36.32 99.9 0.1162 12.52 9.32 30315
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.14 2.17 0.3677 3.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7CWQ 2.14 36.32 28774 1473 99.85 0.17166 0.16911 0.1793 0.22073 0.2281 RANDOM 17.573
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 -0.54 1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.78 r_dihedral_angle_4_deg 19.48 r_dihedral_angle_3_deg 14.39 r_dihedral_angle_1_deg 7.519 r_long_range_B_refined 4.624 r_long_range_B_other 4.624 r_scangle_other 2.722 r_mcangle_it 1.891 r_mcangle_other 1.89 r_scbond_it 1.749
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.78 r_dihedral_angle_4_deg 19.48 r_dihedral_angle_3_deg 14.39 r_dihedral_angle_1_deg 7.519 r_long_range_B_refined 4.624 r_long_range_B_other 4.624 r_scangle_other 2.722 r_mcangle_it 1.891 r_mcangle_other 1.89 r_scbond_it 1.749 r_scbond_other 1.748 r_angle_refined_deg 1.61 r_angle_other_deg 1.371 r_mcbond_it 1.219 r_mcbond_other 1.219 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4116 Nucleic Acid Atoms Solvent Atoms 458 Heterogen Atoms 28
Software Software Software Name Purpose SAINT data reduction SAINT data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing