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Crystal structure of QA-hNTAQ1 C28S
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4W79
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295.15 0.2 M Magnesium chloride hexahydrate, 0.1 M Tris pH 8.5, and 25 % (w/v) Polyethylene glycol (PEG) 3350
Crystal Properties Matthews coefficient Solvent content 2.39 48.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.059 α = 90 b = 64.125 β = 98.873 c = 80.042 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2020-10-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9794 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 95.2 0.995 15.87 5.3 25723
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.09 0.744
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.067 43.57 23265 1145 85.703 0.204 0.2036 0.2077 0.2194 0.2225 28.274
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.216 0.055 -0.668 -0.539
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.13 r_dihedral_angle_3_deg 12.916 r_dihedral_angle_4_deg 11.864 r_dihedral_angle_1_deg 6.484 r_lrange_it 4.288 r_lrange_other 4.171 r_mcangle_it 2.332 r_mcangle_other 2.332 r_scangle_it 1.667 r_scangle_other 1.667
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.13 r_dihedral_angle_3_deg 12.916 r_dihedral_angle_4_deg 11.864 r_dihedral_angle_1_deg 6.484 r_lrange_it 4.288 r_lrange_other 4.171 r_mcangle_it 2.332 r_mcangle_other 2.332 r_scangle_it 1.667 r_scangle_other 1.667 r_mcbond_it 1.27 r_mcbond_other 1.269 r_angle_refined_deg 1.175 r_angle_other_deg 1.084 r_scbond_it 0.932 r_scbond_other 0.93 r_nbd_other 0.195 r_nbd_refined 0.181 r_symmetry_nbd_other 0.168 r_nbtor_refined 0.163 r_symmetry_nbd_refined 0.159 r_symmetry_xyhbond_nbd_refined 0.137 r_xyhbond_nbd_refined 0.129 r_symmetry_nbtor_other 0.07 r_chiral_restr 0.041 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3280 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction HKL-2000 data scaling PHASER phasing