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HSV-1 DNA polymerase-processivity factor complex in pre-translocation state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7LUF
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 20.14 r_lrange_other 20.132 r_dihedral_angle_6_deg 17.059 r_dihedral_angle_3_deg 13.813 r_scangle_it 12.138 r_scangle_other 12.137 r_mcangle_it 9.357 r_mcangle_other 9.356 r_dihedral_angle_2_deg 9.247 r_dihedral_angle_1_deg 8.093
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 20.14 r_lrange_other 20.132 r_dihedral_angle_6_deg 17.059 r_dihedral_angle_3_deg 13.813 r_scangle_it 12.138 r_scangle_other 12.137 r_mcangle_it 9.357 r_mcangle_other 9.356 r_dihedral_angle_2_deg 9.247 r_dihedral_angle_1_deg 8.093 r_scbond_it 7.563 r_scbond_other 7.563 r_mcbond_it 6.274 r_mcbond_other 6.274 r_angle_refined_deg 1.575 r_angle_other_deg 0.505 r_nbd_refined 0.201 r_symmetry_nbd_other 0.179 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.094 r_symmetry_nbtor_other 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.001 r_bond_other_d
Sample HSV-1 DNA polymerase-processivity factor complex in pre-translocation state
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 58332 Reported Resolution (Å) 2.41 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7LUF) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 58
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 1500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 165000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3.3 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1 INITIAL EULER ASSIGNMENT cryoSPARC 3.3 FINAL EULER ASSIGNMENT cryoSPARC 4 CLASSIFICATION cryoSPARC 4 RECONSTRUCTION cryoSPARC 4
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE