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transcription factor BARHL2 bound to DNA sequences
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.8 293 PEG 4000, sodium acetate,
Crystal Properties Matthews coefficient Solvent content 2.66 53.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.426 α = 90 b = 134.56 β = 93.18 c = 64.491 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.8856 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 46.52 99.5 0.224 0.263 0.135 0.985 5.9 3.8 20553
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 97.5 1.827 2.114 1.055 0.285 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 39.4 19494 1034 99.51 0.24507 0.2434 0.2462 0.27378 0.279 RANDOM 55.067
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.67 -0.98 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.761 r_dihedral_angle_1_deg 5.852 r_dihedral_angle_2_deg 5.053 r_long_range_B_refined 4.106 r_long_range_B_other 4.097 r_scangle_other 1.667 r_mcangle_it 1.554 r_mcangle_other 1.554 r_angle_refined_deg 1.272 r_scbond_it 1.033
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.761 r_dihedral_angle_1_deg 5.852 r_dihedral_angle_2_deg 5.053 r_long_range_B_refined 4.106 r_long_range_B_other 4.097 r_scangle_other 1.667 r_mcangle_it 1.554 r_mcangle_other 1.554 r_angle_refined_deg 1.272 r_scbond_it 1.033 r_scbond_other 1.033 r_mcbond_it 0.907 r_mcbond_other 0.905 r_angle_other_deg 0.411 r_chiral_restr 0.13 r_gen_planes_refined 0.009 r_bond_refined_d 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2444 Nucleic Acid Atoms 1942 Solvent Atoms 170 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing