X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2933 M sodium chloride, 0.1 citric acid, pH 3.5
Crystal Properties
Matthews coefficientSolvent content
2.6653.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.42α = 90
b = 57.42β = 90
c = 172.05γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray80PIXELDECTRIS PILATUS 12M2018-09-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I232.7552DiamondI23

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.854.4795.250.091520.092470.01277135.145.61319921.71
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8640.99320.843.29

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.854.471259362195.170.174620.173710.19375RANDOM25.058
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.730.73-1.47
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg13.346
r_dihedral_angle_1_deg8.637
r_long_range_B_refined8.513
r_long_range_B_other8.472
r_dihedral_angle_2_deg4.46
r_mcangle_it3.435
r_mcangle_other3.433
r_scangle_other3.244
r_mcbond_it1.926
r_mcbond_other1.926
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg13.346
r_dihedral_angle_1_deg8.637
r_long_range_B_refined8.513
r_long_range_B_other8.472
r_dihedral_angle_2_deg4.46
r_mcangle_it3.435
r_mcangle_other3.433
r_scangle_other3.244
r_mcbond_it1.926
r_mcbond_other1.926
r_scbond_it1.924
r_scbond_other1.922
r_angle_refined_deg0.93
r_angle_other_deg0.356
r_chiral_restr0.052
r_gen_planes_refined0.007
r_bond_refined_d0.005
r_gen_planes_other0.002
r_bond_other_d0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms926
Nucleic Acid Atoms
Solvent Atoms69
Heterogen Atoms13

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
HKL2Mapphasing