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Wait Complex: BAM bound Darobactin-B and Extended SurA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7NRI experimental model PDB 8PZ2 experimental model PDB 7P1C
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 5.479 f_angle_d 0.627 f_chiral_restr 0.045 f_bond_d 0.004 f_plane_restr 0.004
Sample Wait Complex: BAM bound Darobactin-B and Extended SurA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 164058 Reported Resolution (Å) 2.9 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7NRI, 8PZ2, 7P1C) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value 82 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 39.8
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 900 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 130000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND MODEL FITTING UCSF ChimeraX INITIAL EULER ASSIGNMENT RELION FINAL EULER ASSIGNMENT RELION CLASSIFICATION RELION RECONSTRUCTION RELION MODEL REFINEMENT PHENIX 1.19.2_4158:0000
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 555616