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human Carbonic Anhydrase I in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JV0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 296 28-31% PEG4000, 0.2 M Sodium acetate, 0.1 M Tris pH 8.5-9.0
Crystal Properties Matthews coefficient Solvent content 2.34 47.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.35 α = 90 b = 71.41 β = 90 c = 121.46 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 0.9717 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.72 50 99.6 0.104 0.108 0.999 19.06 12.4 58501
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.72 1.76 97.3 1.172 1.235 0.833 2.31 10.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.72 50 58501 2976 99.586 0.192 0.1897 0.2001 0.23 0.2373 23.302
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.839 2.251 -1.412
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.851 r_dihedral_angle_4_deg 18.758 r_dihedral_angle_3_deg 14.521 r_dihedral_angle_1_deg 7.559 r_lrange_other 5.23 r_lrange_it 5.229 r_scangle_it 4.258 r_scangle_other 4.258 r_scbond_it 2.835 r_scbond_other 2.834
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.851 r_dihedral_angle_4_deg 18.758 r_dihedral_angle_3_deg 14.521 r_dihedral_angle_1_deg 7.559 r_lrange_other 5.23 r_lrange_it 5.229 r_scangle_it 4.258 r_scangle_other 4.258 r_scbond_it 2.835 r_scbond_other 2.834 r_mcangle_it 2.738 r_mcangle_other 2.738 r_mcbond_it 1.971 r_mcbond_other 1.971 r_angle_refined_deg 1.653 r_angle_other_deg 1.388 r_symmetry_nbd_refined 0.255 r_nbd_refined 0.202 r_nbd_other 0.2 r_symmetry_nbd_other 0.184 r_nbtor_refined 0.167 r_xyhbond_nbd_refined 0.135 r_symmetry_xyhbond_nbd_refined 0.107 r_metal_ion_refined 0.104 r_chiral_restr 0.082 r_symmetry_nbtor_other 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4024 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing