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Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylbenzyl)phenylsulfonamido)methyl)phenyl)glycine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FIK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 296 1.5 M sodium citrate, 0.1 M Tris pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.11 41.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.44 α = 90 b = 41.46 β = 104.41 c = 72.41 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.22 40.112 84.6 0.039 0.043 0.999 21.84 5.4 60827
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.22 1.26 26 0.322 0.423 0.834 2.35 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.225 40.112 60827 3029 84.585 0.118 0.1167 0.1281 0.1524 0.1617 17.268
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.471 -0.289 0.719 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.782 r_dihedral_angle_4_deg 22.868 r_dihedral_angle_3_deg 13.453 r_rigid_bond_restr 13.419 r_lrange_it 12.577 r_lrange_other 12.574 r_mcbond_it 10.374 r_mcbond_other 10.366 r_mcangle_it 9.978 r_mcangle_other 9.974
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.782 r_dihedral_angle_4_deg 22.868 r_dihedral_angle_3_deg 13.453 r_rigid_bond_restr 13.419 r_lrange_it 12.577 r_lrange_other 12.574 r_mcbond_it 10.374 r_mcbond_other 10.366 r_mcangle_it 9.978 r_mcangle_other 9.974 r_scangle_it 8.511 r_scangle_other 8.509 r_dihedral_angle_1_deg 6.958 r_scbond_it 6.335 r_scbond_other 6.333 r_angle_refined_deg 2.174 r_angle_other_deg 1.545 r_nbd_refined 0.25 r_symmetry_nbd_refined 0.231 r_nbd_other 0.211 r_symmetry_nbd_other 0.202 r_nbtor_refined 0.181 r_symmetry_xyhbond_nbd_refined 0.171 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.129 r_symmetry_nbtor_other 0.09 r_metal_ion_refined 0.071 r_xyhbond_nbd_other 0.065 r_bond_refined_d 0.021 r_gen_planes_refined 0.015 r_gen_planes_other 0.008 r_bond_other_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2053 Nucleic Acid Atoms Solvent Atoms 258 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing