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Pseudomonas aeruginosa FabF C164A in complex with 3-amino-N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)benzamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other In-house determined apo structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.24M ammonium formate and 35% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.1 41.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.018 α = 90 b = 103.667 β = 90 c = 141.315 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2023-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.8731 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 72.35 100 0.998 10.8 6.8 115834
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.51 1.54 98.5 0.293 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.51 72.349 115789 5757 99.895 0.194 0.1916 0.1876 0.236 0.1819 30.804
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.471 0.62 0.851
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.242 r_dihedral_angle_3_deg 15.65 r_dihedral_angle_2_deg 14.619 r_lrange_other 7.208 r_lrange_it 7.206 r_dihedral_angle_1_deg 6.813 r_scangle_it 6.57 r_scangle_other 6.569 r_scbond_it 4.764 r_scbond_other 4.763
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.242 r_dihedral_angle_3_deg 15.65 r_dihedral_angle_2_deg 14.619 r_lrange_other 7.208 r_lrange_it 7.206 r_dihedral_angle_1_deg 6.813 r_scangle_it 6.57 r_scangle_other 6.569 r_scbond_it 4.764 r_scbond_other 4.763 r_mcangle_it 4.476 r_mcangle_other 4.476 r_mcbond_other 3.724 r_mcbond_it 3.723 r_angle_refined_deg 1.868 r_angle_other_deg 0.734 r_nbd_refined 0.208 r_nbtor_refined 0.174 r_symmetry_nbd_other 0.17 r_xyhbond_nbd_refined 0.14 r_nbd_other 0.127 r_symmetry_nbd_refined 0.108 r_chiral_restr 0.105 r_symmetry_xyhbond_nbd_refined 0.093 r_symmetry_xyhbond_nbd_other 0.084 r_symmetry_nbtor_other 0.077 r_ncsr_local_group_1 0.066 r_dihedral_angle_other_2_deg 0.024 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6060 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement xia2 data reduction DIALS data scaling PHASER phasing