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X-ray crystallographic structure of SnoaL2 in complex with the polyketide reaction product
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.1 M MES pH 6.5, 0.2 M MgCl2, 25% PEG3350, ligand at 2 mM
Crystal Properties Matthews coefficient Solvent content 2.18 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.96 α = 90 b = 62.195 β = 90 c = 89.644 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS 2M MIRRORS 2018-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8731 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 36.77 96.7 0.092 0.07 0.997 9 2.1 19854 1.5 52.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 89.7 0.736 0.583 0.529 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 36 18877 947 96.05 0.19673 0.1946 0.2038 0.23821 0.247 RANDOM 33.125
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.12 -2.11 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.699 r_dihedral_angle_4_deg 20.882 r_dihedral_angle_3_deg 15.239 r_long_range_B_refined 7.517 r_long_range_B_other 7.438 r_dihedral_angle_1_deg 5.859 r_scangle_other 5.337 r_mcangle_other 3.589 r_mcangle_it 3.585 r_scbond_it 3.529
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.699 r_dihedral_angle_4_deg 20.882 r_dihedral_angle_3_deg 15.239 r_long_range_B_refined 7.517 r_long_range_B_other 7.438 r_dihedral_angle_1_deg 5.859 r_scangle_other 5.337 r_mcangle_other 3.589 r_mcangle_it 3.585 r_scbond_it 3.529 r_scbond_other 3.528 r_mcbond_it 2.547 r_mcbond_other 2.541 r_angle_refined_deg 1.894 r_angle_other_deg 1.024 r_chiral_restr 0.096 r_gen_planes_refined 0.026 r_bond_refined_d 0.018 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2065 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction MOLREP phasing