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Unspecific peroxygenase from Marasmius wettsteinii (MweUPO-1) in complex with testosterone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FUK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 13% PEG 4000, 200mM ammonium sulfate.
Soaking: 40 mM testosterone, 5 hours, cryoprotected with 15% glycerol
Crystal Properties Matthews coefficient Solvent content 2.43 49.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.999 α = 90 b = 75.999 β = 90 c = 185.826 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M KB MIRRORS 2021-04-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.9792 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 48.01 99.7 0.082 0.089 0.033 0.996 13.2 7.1 40573
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 100 0.576 0.618 0.221 0.084 2.8 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 40.62 37917 1986 98.2 0.19555 0.1939 0.22659 0.2243 RANDOM 29.549
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 0.55 -1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.799 r_dihedral_angle_2_deg 7.598 r_dihedral_angle_1_deg 6.596 r_long_range_B_refined 5.18 r_long_range_B_other 5.163 r_scangle_other 3.948 r_mcangle_it 2.861 r_mcangle_other 2.86 r_scbond_it 2.567 r_scbond_other 2.562
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.799 r_dihedral_angle_2_deg 7.598 r_dihedral_angle_1_deg 6.596 r_long_range_B_refined 5.18 r_long_range_B_other 5.163 r_scangle_other 3.948 r_mcangle_it 2.861 r_mcangle_other 2.86 r_scbond_it 2.567 r_scbond_other 2.562 r_mcbond_it 2.009 r_mcbond_other 2.009 r_angle_refined_deg 1.306 r_angle_other_deg 0.465 r_chiral_restr 0.065 r_gen_planes_other 0.008 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3642 Nucleic Acid Atoms Solvent Atoms 407 Heterogen Atoms 242
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing