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KLHDC2 in complex with EloB and EloC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5T35 in silico model AlphaFold KLHDC2_AF-Q9Y2U9-F1-model_V4
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 7.702 f_angle_d 1.301 f_chiral_restr 0.07 f_plane_restr 0.009 f_bond_d 0.007
Sample Full-length KLHDC2 in complex with EloB and EloC
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument SPT LABTECH CHAMELEON Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 185914 Reported Resolution (Å) 3.74 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (5T35, 5T35) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value 337 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 58.1
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3.3.1 CTF CORRECTION cryoSPARC 3.3.1 MODEL FITTING PHENIX 1.20.1 INITIAL EULER ASSIGNMENT cryoSPARC 3.3.1 FINAL EULER ASSIGNMENT cryoSPARC 3.3.1 CLASSIFICATION cryoSPARC 4.1.1 RECONSTRUCTION cryoSPARC 4.1.1 MODEL REFINEMENT PHENIX 1.20.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 4153896