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Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6M9K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 298 2.0 M ammonium sulfate, 0.1 M Tris pH 8.6
Crystal Properties Matthews coefficient Solvent content 2.18 43.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.313 α = 90 b = 69.222 β = 90 c = 70.536 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M KB mirrors, fixed focus 2020-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.775 49.41 86.5 0.055 0.06 0.024 0.999 15.1 6.3 16243
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.775 1.891 25.5 1.399 1.516 0.576 0.659 1.3 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.775 49.405 16243 881 86.45 0.184 0.1816 0.1941 0.2341 0.2396 40.411
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.081 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.272 r_dihedral_angle_6_deg 12.726 r_lrange_it 9.577 r_lrange_other 9.576 r_scangle_it 8.623 r_scangle_other 8.618 r_dihedral_angle_1_deg 6.885 r_scbond_it 5.53 r_scbond_other 5.526 r_mcangle_other 4.894
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.272 r_dihedral_angle_6_deg 12.726 r_lrange_it 9.577 r_lrange_other 9.576 r_scangle_it 8.623 r_scangle_other 8.618 r_dihedral_angle_1_deg 6.885 r_scbond_it 5.53 r_scbond_other 5.526 r_mcangle_other 4.894 r_mcangle_it 4.881 r_dihedral_angle_2_deg 4.465 r_mcbond_it 3.75 r_mcbond_other 3.738 r_angle_refined_deg 1.472 r_angle_other_deg 0.488 r_nbd_refined 0.212 r_nbd_other 0.21 r_symmetry_nbd_refined 0.195 r_nbtor_refined 0.179 r_symmetry_nbd_other 0.177 r_xyhbond_nbd_refined 0.172 r_symmetry_xyhbond_nbd_refined 0.104 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.073 r_bond_refined_d 0.009 r_symmetry_xyhbond_nbd_other 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1224 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling MOLREP phasing