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Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6M9K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 298 1.2 M sodium citrate tribasic dihydrate, 0.1 M Tris pH 8.6
Crystal Properties Matthews coefficient Solvent content 2.2 43.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.042 α = 90 b = 70.042 β = 90 c = 38.408 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M KB mirrors, fixed focus 2020-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.576 49.527 84.6 0.054 0.056 0.016 1 18.8 12.3 11588
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.576 1.683 24.3 2.123 2.213 0.615 0.473 1.2 11.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.576 49.527 11588 577 84.535 0.203 0.2011 0.2149 0.232 0.2367 44.204
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.042 0.042 -0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.407 r_lrange_other 12.73 r_lrange_it 12.679 r_dihedral_angle_6_deg 12.286 r_scangle_it 10.244 r_scangle_other 10.233 r_dihedral_angle_1_deg 7.326 r_scbond_it 6.673 r_scbond_other 6.663 r_mcangle_other 6.024
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.407 r_lrange_other 12.73 r_lrange_it 12.679 r_dihedral_angle_6_deg 12.286 r_scangle_it 10.244 r_scangle_other 10.233 r_dihedral_angle_1_deg 7.326 r_scbond_it 6.673 r_scbond_other 6.663 r_mcangle_other 6.024 r_mcangle_it 6.008 r_dihedral_angle_2_deg 5.159 r_mcbond_it 4.538 r_mcbond_other 4.529 r_angle_refined_deg 1.632 r_angle_other_deg 0.514 r_xyhbond_nbd_refined 0.205 r_nbd_refined 0.201 r_symmetry_nbd_other 0.184 r_nbtor_refined 0.18 r_nbd_other 0.159 r_symmetry_nbd_refined 0.117 r_symmetry_xyhbond_nbd_refined 0.105 r_chiral_restr 0.079 r_symmetry_nbtor_other 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 608 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling MOLREP phasing