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Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6M9K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 2.4 M ammonium phosphate dibasic, 0.1M Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.12 41.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.596 α = 90 b = 67.895 β = 90 c = 71.27 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M KB mirrors, fixed focus 2020-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.979310 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.484 35.66 63.3 0.074 0.082 0.033 0.999 13.4 5.6 19557
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.484 1.643 12.2 0.699 0.853 0.475 0.554 1.4 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.484 35.66 19557 953 63.289 0.206 0.2029 0.2029 0.2589 0.2595 21.724
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.117 -0.065 -0.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.694 r_dihedral_angle_6_deg 13.931 r_lrange_it 7.801 r_lrange_other 7.637 r_dihedral_angle_1_deg 6.64 r_scangle_it 5.849 r_scangle_other 5.846 r_scbond_it 3.621 r_scbond_other 3.619 r_mcangle_it 3.439
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.694 r_dihedral_angle_6_deg 13.931 r_lrange_it 7.801 r_lrange_other 7.637 r_dihedral_angle_1_deg 6.64 r_scangle_it 5.849 r_scangle_other 5.846 r_scbond_it 3.621 r_scbond_other 3.619 r_mcangle_it 3.439 r_mcangle_other 3.439 r_dihedral_angle_2_deg 3.387 r_mcbond_it 2.233 r_mcbond_other 2.228 r_angle_refined_deg 1.437 r_angle_other_deg 0.492 r_symmetry_nbd_refined 0.287 r_nbd_refined 0.223 r_xyhbond_nbd_refined 0.196 r_symmetry_nbd_other 0.177 r_nbtor_refined 0.175 r_symmetry_xyhbond_nbd_refined 0.167 r_nbd_other 0.157 r_symmetry_nbtor_other 0.075 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1258 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling MOLREP phasing