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CA9 mimic with SLC compound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7MU3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 The protein was set up in MRC2 plates in 100 nL plus 100 nL drops with the protein at 5 mg/mL with reservoir solutions being 2.6 to 2.9 M ammonium sulfate and 100 mM Tris buffer at pH 8.3 to 8.9
Crystal Properties Matthews coefficient Solvent content 2.09 41.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.985 α = 90 b = 41.414 β = 103.968 c = 72.309 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.953659 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.21 41.4 97.5 0.072 0.03 0.999 12.4 6.7 70793
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.21 1.24 83.5 0.779 0.326 0.736 2.3 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.215 39.664 70773 3563 97.169 0.114 0.1129 0.143 0.1587 15.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.368 0.476 0.72 -0.524
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.553 r_lrange_it 13.814 r_dihedral_angle_3_deg 13.063 r_lrange_other 12.916 r_scangle_it 10.794 r_scangle_other 10.567 r_mcangle_other 7.927 r_mcangle_it 7.905 r_scbond_it 7.397 r_scbond_other 7.224
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.553 r_lrange_it 13.814 r_dihedral_angle_3_deg 13.063 r_lrange_other 12.916 r_scangle_it 10.794 r_scangle_other 10.567 r_mcangle_other 7.927 r_mcangle_it 7.905 r_scbond_it 7.397 r_scbond_other 7.224 r_dihedral_angle_1_deg 6.43 r_mcbond_it 6.272 r_dihedral_angle_2_deg 5.82 r_mcbond_other 4.989 r_rigid_bond_restr 4.848 r_angle_refined_deg 1.763 r_symmetry_xyhbond_nbd_other 0.589 r_angle_other_deg 0.584 r_symmetry_nbd_refined 0.339 r_nbd_refined 0.24 r_xyhbond_nbd_refined 0.228 r_symmetry_nbd_other 0.206 r_nbd_other 0.199 r_nbtor_refined 0.184 r_symmetry_xyhbond_nbd_refined 0.156 r_chiral_restr 0.095 r_symmetry_nbtor_other 0.087 r_metal_ion_refined 0.056 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2066 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing