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Fundamental Characterization of Chelated and Crystallized Actinium in a Macromolecular Host
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L6M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 Acetate (pH 4), Li2SO4, NaCl, ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 3.19 61.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.855 α = 90 b = 114.855 β = 90 c = 119.273 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2022-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.00 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 82.77 96.2 0.095 0.104 0.039 0.995 8.5 6.2 48793
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.04 2.1 97.8 0.509 0.558 0.22 0.854 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.08 48.12 45773 2438 99.38 0.22603 0.22457 0.2319 0.25478 0.2607 RANDOM 67.381
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.8 0.8 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.462 r_dihedral_angle_4_deg 15.059 r_dihedral_angle_3_deg 14.768 r_long_range_B_refined 9.152 r_long_range_B_other 9.15 r_dihedral_angle_1_deg 7.594 r_scangle_other 6.89 r_mcangle_it 5.221 r_mcangle_other 5.221 r_scbond_it 4.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.462 r_dihedral_angle_4_deg 15.059 r_dihedral_angle_3_deg 14.768 r_long_range_B_refined 9.152 r_long_range_B_other 9.15 r_dihedral_angle_1_deg 7.594 r_scangle_other 6.89 r_mcangle_it 5.221 r_mcangle_other 5.221 r_scbond_it 4.61 r_scbond_other 4.542 r_mcbond_it 3.681 r_mcbond_other 3.675 r_angle_refined_deg 1.435 r_angle_other_deg 1.238 r_chiral_restr 0.075 r_bond_refined_d 0.016 r_gen_planes_refined 0.013 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4115 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement pointless data scaling MOSFLM data reduction REFMAC phasing