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Composite map of AMPylated GlnA bound to hinT
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 34.207 r_long_range_B_other 34.206 r_scangle_other 27.982 r_mcangle_other 19.652 r_mcangle_it 19.651 r_scbond_it 16.779 r_scbond_other 16.777 r_dihedral_angle_3_deg 13.867 r_mcbond_it 13.051 r_mcbond_other 13.051
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 34.207 r_long_range_B_other 34.206 r_scangle_other 27.982 r_mcangle_other 19.652 r_mcangle_it 19.651 r_scbond_it 16.779 r_scbond_other 16.777 r_dihedral_angle_3_deg 13.867 r_mcbond_it 13.051 r_mcbond_other 13.051 r_dihedral_angle_1_deg 4.64 r_dihedral_angle_2_deg 3.771 r_angle_refined_deg 1.222 r_angle_other_deg 0.374 r_chiral_restr 0.062 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample GlnA dimer binding to hinT dimer
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 225422 Reported Resolution (Å) 2.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 900 Maximum Defocus (nm) 2200 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Gautomatch 0.56 IMAGE ACQUISITION SerialEM 4.0 CTF CORRECTION Gctf MODEL FITTING UCSF Chimera MODEL FITTING Coot INITIAL EULER ASSIGNMENT RELION 4.0.1 FINAL EULER ASSIGNMENT RELION 4.0.1 CLASSIFICATION RELION 4.0.1 RECONSTRUCTION RELION 4.0.1 MODEL REFINEMENT PHENIX 1.20.1-4487 MODEL REFINEMENT REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION