☰ Navigation Tabs
Crystal structure of Gdx-Clo A60T from Small Multidrug Resistance family of transporters in complex with cetyltrimetylammonium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6WK9 Crystal structure of Gdx-Clo from Small Multidrug Resistance family of transporters in complex with octylguanidinium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.75 293 100 mM CaCl2, 100 mM N-(2-acetamido)iminodiacetic acid (ADA) pH 6.75, and 33% PEG 600
Crystal Properties Matthews coefficient Solvent content 4.42 72.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.132 α = 93.27 b = 74.873 β = 89.93 c = 108.252 γ = 109.51
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD MARMOSAIC 300 mm CCD 2021-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.1272 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 70.5 82.1 0.98 6.2 3.8 22068
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.29 2.75 68.9 0.614 2.1 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.29 35.22 22068 1153 32.97 0.2779 0.2773 0.2774 0.289 0.2914 49.36
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.731 f_angle_d 0.667 f_chiral_restr 0.045 f_plane_restr 0.005 f_bond_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5896 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 57
Software Software Software Name Purpose PHENIX refinement DIALS data collection STARANISO data scaling PHASER phasing DIALS data reduction