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TAS-120 covalent structure with FGFR2 molecular brake mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5UGL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 0.2 M Lithium sulfate 0.1 M Bis-Tris 6.5 25 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.35 47.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.13 α = 90 b = 129.867 β = 90 c = 132.385 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2021-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.12713 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 33.3 99.88 0.149 0.155 0.043 0.998 8.2 12.9 89461
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.04 2.11 99.84 1.73 1.808 0.519 0.798 1.5 11.87
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.04 33 87298 1990 99.66 0.2197 0.219 0.2256 0.2503 0.2518 RANDOM 42.028
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.03 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.825 r_dihedral_angle_4_deg 15.686 r_dihedral_angle_3_deg 14.434 r_dihedral_angle_1_deg 5.784 r_angle_refined_deg 1.022 r_angle_other_deg 0.476 r_chiral_restr 0.053 r_bond_other_d 0.028 r_bond_refined_d 0.004 r_gen_planes_refined 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.825 r_dihedral_angle_4_deg 15.686 r_dihedral_angle_3_deg 14.434 r_dihedral_angle_1_deg 5.784 r_angle_refined_deg 1.022 r_angle_other_deg 0.476 r_chiral_restr 0.053 r_bond_other_d 0.028 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9464 Nucleic Acid Atoms Solvent Atoms 447 Heterogen Atoms 193
Software Software Software Name Purpose SAINT data scaling REFMAC refinement PDB_EXTRACT data extraction SAINT data reduction PHASER phasing