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Crystal structure of measles virus fusion inhibitor MEK35GT complexed with F protein HR1 (HR1-42) (P21 space group)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SVF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 10% (v/v) 2-propanol, 20% (w/v) PEG 4000, 100 mM HEPES (pH 7.5)
Crystal Properties Matthews coefficient Solvent content 2.05 39.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.747 α = 90 b = 53.577 β = 94.957 c = 109.051 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.999990 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.846 50 99.3 0.051 0.999 17.13 3.45 36255
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.846 1.96 98.9 0.482 0.865 2.78 3.53
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.846 48.005 36252 1692 99.312 0.183 0.18 0.1886 0.2396 0.2481 29.816
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.662 -1.807 0.136 -0.477
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.698 r_dihedral_angle_4_deg 16.319 r_dihedral_angle_3_deg 16.127 r_lrange_it 6.715 r_lrange_other 6.591 r_scangle_it 4.952 r_scangle_other 4.951 r_dihedral_angle_1_deg 4.251 r_mcangle_it 3.257 r_mcangle_other 3.252
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.698 r_dihedral_angle_4_deg 16.319 r_dihedral_angle_3_deg 16.127 r_lrange_it 6.715 r_lrange_other 6.591 r_scangle_it 4.952 r_scangle_other 4.951 r_dihedral_angle_1_deg 4.251 r_mcangle_it 3.257 r_mcangle_other 3.252 r_scbond_it 3.09 r_scbond_other 3.09 r_mcbond_it 2.316 r_mcbond_other 2.311 r_angle_refined_deg 1.402 r_angle_other_deg 1.351 r_symmetry_nbd_refined 0.231 r_nbd_other 0.208 r_nbd_refined 0.207 r_symmetry_xyhbond_nbd_refined 0.181 r_xyhbond_nbd_refined 0.17 r_symmetry_nbd_other 0.165 r_nbtor_refined 0.144 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3626 Nucleic Acid Atoms Solvent Atoms 408 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing