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Crystal structure of mouse Galectin-3 in complex with small molecule inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8ITZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 BUFFER = 0.1M TRIS (7.8), SALT= NASCN; PRECIPITANT = PEG 6K
Crystal Properties Matthews coefficient Solvent content 2.05 40.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.745 α = 90 b = 58.108 β = 90 c = 62.963 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9801 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 42.7 90 0.8 1 1 22138
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.62 0.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 42.7 20995 1093 89.77 0.15909 0.15772 0.1581 0.18544 0.1854 RANDOM 17.542
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.87 -0.12 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.08 r_dihedral_angle_3_deg 12.223 r_long_range_B_refined 11.22 r_long_range_B_other 10.323 r_dihedral_angle_4_deg 8.25 r_dihedral_angle_1_deg 7.323 r_scangle_other 3.937 r_scbond_it 2.66 r_scbond_other 2.635 r_mcangle_it 1.916
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.08 r_dihedral_angle_3_deg 12.223 r_long_range_B_refined 11.22 r_long_range_B_other 10.323 r_dihedral_angle_4_deg 8.25 r_dihedral_angle_1_deg 7.323 r_scangle_other 3.937 r_scbond_it 2.66 r_scbond_other 2.635 r_mcangle_it 1.916 r_mcangle_other 1.915 r_angle_refined_deg 1.751 r_mcbond_it 1.358 r_mcbond_other 1.346 r_angle_other_deg 0.616 r_chiral_restr 0.097 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1105 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 43
Software Software Software Name Purpose BUSTER refinement Aimless data scaling XDS data reduction PHASER phasing