☰ Navigation Tabs
StmPr1, Stenotrophomonas maltophilia Protease 1, 36 kDa alkine serine protease
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Model from earlier experiments so far not published
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293.15 1.8 M ammonium sulfate
0.1 M Tris
Crystal Properties Matthews coefficient Solvent content 2.38 48.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.385 α = 90 b = 86.382 β = 90 c = 131.573 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.968 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.637 49.541 100 0.178 0.185 0.05 0.997 1.38 13.4 42779 17.53
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.637 1.665 100 1.322 0.377 0.869 13.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.637 49.541 42779 2140 99.993 0.175 0.1728 0.1727 0.2088 0.2088 RANDOM 20.041
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.666 r_dihedral_angle_3_deg 13.123 r_dihedral_angle_2_deg 6.744 r_dihedral_angle_1_deg 6.621 r_lrange_it 4.65 r_scangle_it 3.834 r_scbond_it 2.739 r_mcangle_it 2.274 r_angle_refined_deg 1.869 r_mcbond_it 1.629
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.666 r_dihedral_angle_3_deg 13.123 r_dihedral_angle_2_deg 6.744 r_dihedral_angle_1_deg 6.621 r_lrange_it 4.65 r_scangle_it 3.834 r_scbond_it 2.739 r_mcangle_it 2.274 r_angle_refined_deg 1.869 r_mcbond_it 1.629 r_nbtor_refined 0.31 r_nbd_refined 0.209 r_symmetry_xyhbond_nbd_refined 0.15 r_symmetry_nbd_refined 0.149 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.119 r_metal_ion_refined 0.119 r_bond_refined_d 0.011 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2530 Nucleic Acid Atoms Solvent Atoms 360 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling PHASER phasing