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RNA binding domain of Turnip crinkle virus p38, p38R
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.0 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 50 mM 7.0 1 bar 283 Bruker AVANCE III 800 2 2D 1H-13C HSQC aliphatic 1.0 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 50 mM 7.0 1 bar 283 Bruker AVANCE III 800 3 2D 1H-13C HSQC aromatic 1.0 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 50 mM 7.0 1 bar 283 Bruker AVANCE III 800 4 3D HNCACB 1.0 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 50 mM 7.0 1 bar 283 Bruker AVANCE III 800 5 3D 1H-15N TOCSY 1.0 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 50 mM 7.0 1 bar 283 Bruker AVANCE III 800 6 3D HCCH-TOCSY 1.0 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 50 mM 7.0 1 bar 283 Bruker AVANCE III 800 7 3D 1H-15N NOESY 1.0 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 50 mM 7.0 1 bar 283 Bruker AVANCE III 800 8 3D 1H-13C NOESY aliphatic 1.0 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 50 mM 7.0 1 bar 283 Bruker AVANCE III 800 9 3D 1H-13C NOESY aromatic 1.0 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 50 mM 7.0 1 bar 283 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 20 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment NMRViewJ Johnson, One Moon Scientific 2 structure calculation CNS Brunger, Adams, Clore, Gros, Nilges and Read 5 structure calculation ARIA Linge, O'Donoghue and Nilges 3 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 4 peak picking NMRViewJ Johnson, One Moon Scientific 6 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax