☰ Navigation Tabs
Human KRas4A (GDP) in complex with compound 9
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other unreleased crystal structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 292 25% PEG 8000, 300 mM LiCl, 100 mM bis-tris propane
Crystal Properties Matthews coefficient Solvent content 2.11 41.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.05 α = 90 b = 40.24 β = 90 c = 110.94 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.87 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 26.17 99.1 0.049 0.064 0.03 16.3 4.3 22384 15.103
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 99.7 0.539 0.682 0.317 2.4 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 26.17 21228 1118 98.61 0.1765 0.175 0.1894 0.2077 0.2128 RANDOM 22.262
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 -0.17 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.144 r_dihedral_angle_4_deg 20.056 r_dihedral_angle_3_deg 14.258 r_dihedral_angle_1_deg 4.707 r_angle_other_deg 2.366 r_angle_refined_deg 2.059 r_mcangle_it 2.007 r_mcbond_other 1.363 r_mcbond_it 1.362 r_chiral_restr 0.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.144 r_dihedral_angle_4_deg 20.056 r_dihedral_angle_3_deg 14.258 r_dihedral_angle_1_deg 4.707 r_angle_other_deg 2.366 r_angle_refined_deg 2.059 r_mcangle_it 2.007 r_mcbond_other 1.363 r_mcbond_it 1.362 r_chiral_restr 0.123 r_bond_other_d 0.035 r_bond_refined_d 0.018 r_gen_planes_other 0.013 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1362 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement xia2 data scaling PDB_EXTRACT data extraction XDS data reduction