☰ Navigation Tabs
Human KRas4A (GMPPNP) in complex with compound 19
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other unreleased crystal structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 292 24% PEG 3350, 150 mM MgCl2, 10 mM CoCl2, 100 mM HEPES
Crystal Properties Matthews coefficient Solvent content 2.05 40.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.541 α = 90 b = 34.241 β = 109.77 c = 69.776 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.29 29.46 96.8 0.057 0.068 0.037 0.997 8.1 3.3 38563
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.29 1.33 81.1 0.517 0.636 0.364 0.944 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 29.46 36660 1900 96.9 0.1839 0.1819 0.1886 0.2235 0.2275 RANDOM 22.528
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.04 0.02 1.16 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.865 r_dihedral_angle_4_deg 13.72 r_dihedral_angle_3_deg 12.44 r_dihedral_angle_1_deg 4.482 r_rigid_bond_restr 2.853 r_mcangle_it 2.486 r_angle_other_deg 2.393 r_mcbond_other 2.129 r_mcbond_it 2.128 r_angle_refined_deg 2.022
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.865 r_dihedral_angle_4_deg 13.72 r_dihedral_angle_3_deg 12.44 r_dihedral_angle_1_deg 4.482 r_rigid_bond_restr 2.853 r_mcangle_it 2.486 r_angle_other_deg 2.393 r_mcbond_other 2.129 r_mcbond_it 2.128 r_angle_refined_deg 2.022 r_chiral_restr 0.136 r_bond_other_d 0.035 r_bond_refined_d 0.02 r_gen_planes_other 0.011 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1362 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction