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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 11b/j
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 14% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.4 48.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.933 α = 90 b = 48.933 β = 90 c = 194.667 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 48.67 99.6 0.09 0.102 0.046 0.998 10.2 7.4 26029
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.84 98.5 1.532 1.819 0.948 0.417 1.1 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 42.413 25957 1304 99.387 0.227 0.2255 0.2272 0.2628 0.2625 37.423
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.71 -0.355 -0.71 2.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.246 r_dihedral_angle_6_deg 14.783 r_dihedral_angle_3_deg 12.598 r_dihedral_angle_1_deg 8.739 r_lrange_it 4.703 r_lrange_other 4.684 r_mcangle_it 2.714 r_mcangle_other 2.713 r_scangle_it 2.607 r_scangle_other 2.606
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.246 r_dihedral_angle_6_deg 14.783 r_dihedral_angle_3_deg 12.598 r_dihedral_angle_1_deg 8.739 r_lrange_it 4.703 r_lrange_other 4.684 r_mcangle_it 2.714 r_mcangle_other 2.713 r_scangle_it 2.607 r_scangle_other 2.606 r_mcbond_it 1.729 r_mcbond_other 1.728 r_scbond_it 1.667 r_scbond_other 1.667 r_angle_refined_deg 1.448 r_angle_other_deg 0.486 r_symmetry_xyhbond_nbd_refined 0.291 r_symmetry_nbd_other 0.192 r_nbd_refined 0.185 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.157 r_nbd_other 0.138 r_symmetry_nbd_refined 0.113 r_ncsr_local_group_1 0.106 r_symmetry_nbtor_other 0.086 r_chiral_restr 0.068 r_symmetry_xyhbond_nbd_other 0.028 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1871 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing