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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12h/m
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 14% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.39 48.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.91 α = 90 b = 48.91 β = 90 c = 193.97 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 48.49 100 0.085 0.092 0.036 0.999 15.3 11.7 28271
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.78 99.9 1.393 1.533 0.633 0.668 1.8 10.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 42.393 28202 1458 99.95 0.214 0.2116 0.2113 0.2598 0.2585 32.873
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.285 -0.142 -0.285 0.924
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.622 r_dihedral_angle_6_deg 15.569 r_dihedral_angle_3_deg 12.406 r_dihedral_angle_1_deg 8.383 r_lrange_it 5.827 r_lrange_other 5.819 r_scangle_it 3.755 r_scangle_other 3.754 r_mcangle_it 3.168 r_mcangle_other 3.167
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.622 r_dihedral_angle_6_deg 15.569 r_dihedral_angle_3_deg 12.406 r_dihedral_angle_1_deg 8.383 r_lrange_it 5.827 r_lrange_other 5.819 r_scangle_it 3.755 r_scangle_other 3.754 r_mcangle_it 3.168 r_mcangle_other 3.167 r_scbond_it 2.729 r_scbond_other 2.727 r_mcbond_it 2.275 r_mcbond_other 2.272 r_angle_refined_deg 2.124 r_angle_other_deg 0.726 r_nbd_refined 0.215 r_xyhbond_nbd_refined 0.198 r_symmetry_nbd_other 0.194 r_symmetry_xyhbond_nbd_refined 0.187 r_nbd_other 0.184 r_nbtor_refined 0.18 r_chiral_restr 0.113 r_ncsr_local_group_1 0.111 r_symmetry_nbd_refined 0.109 r_symmetry_nbtor_other 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1862 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing