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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12c/p
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.43 49.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.974 α = 90 b = 48.974 β = 90 c = 196.224 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 49.06 100 0.07 0.077 0.03 0.999 17.8 11.4 22579
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.94 99.7 1.463 1.654 0.752 0.523 1.5 8.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 42.449 22513 1071 99.911 0.219 0.2169 0.2157 0.2638 0.2649 43.995
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.298 -0.149 -0.298 0.968
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.572 r_dihedral_angle_6_deg 16.085 r_dihedral_angle_3_deg 13.111 r_dihedral_angle_1_deg 7.861 r_lrange_it 6.75 r_lrange_other 6.749 r_scangle_it 5.045 r_scangle_other 5.044 r_mcangle_it 4.06 r_mcangle_other 4.059
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.572 r_dihedral_angle_6_deg 16.085 r_dihedral_angle_3_deg 13.111 r_dihedral_angle_1_deg 7.861 r_lrange_it 6.75 r_lrange_other 6.749 r_scangle_it 5.045 r_scangle_other 5.044 r_mcangle_it 4.06 r_mcangle_other 4.059 r_scbond_it 3.486 r_scbond_other 3.484 r_mcbond_it 3.046 r_mcbond_other 3.037 r_angle_refined_deg 1.939 r_angle_other_deg 0.686 r_nbd_refined 0.205 r_symmetry_xyhbond_nbd_refined 0.203 r_symmetry_nbd_other 0.198 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.164 r_nbd_other 0.136 r_symmetry_nbd_refined 0.129 r_chiral_restr 0.098 r_symmetry_nbtor_other 0.089 r_ncsr_local_group_1 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1862 Nucleic Acid Atoms Solvent Atoms 83 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PHASER phasing autoXDS data reduction