☰ Navigation Tabs
The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12c/l
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 12% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.43 49.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.007 α = 90 b = 49.007 β = 90 c = 196.275 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 49.07 100 0.056 0.061 0.024 1 19.7 11.8 31284
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.73 100 1.265 1.375 0.538 0.738 2.1 12.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 42.477 31207 1522 99.968 0.21 0.2084 0.2078 0.247 0.2442 38.024
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -0.145 -0.29 0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.418 r_dihedral_angle_6_deg 16.418 r_dihedral_angle_3_deg 11.204 r_dihedral_angle_1_deg 7.931 r_lrange_other 6.891 r_lrange_it 6.886 r_scangle_it 4.485 r_scangle_other 4.484 r_mcangle_it 3.632 r_mcangle_other 3.631
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.418 r_dihedral_angle_6_deg 16.418 r_dihedral_angle_3_deg 11.204 r_dihedral_angle_1_deg 7.931 r_lrange_other 6.891 r_lrange_it 6.886 r_scangle_it 4.485 r_scangle_other 4.484 r_mcangle_it 3.632 r_mcangle_other 3.631 r_scbond_it 3.296 r_scbond_other 3.295 r_mcbond_it 2.8 r_mcbond_other 2.793 r_angle_refined_deg 2.268 r_angle_other_deg 0.771 r_symmetry_nbd_refined 0.464 r_symmetry_xyhbond_nbd_refined 0.294 r_xyhbond_nbd_refined 0.207 r_nbd_refined 0.205 r_symmetry_nbd_other 0.198 r_nbtor_refined 0.183 r_nbd_other 0.124 r_ncsr_local_group_1 0.123 r_chiral_restr 0.116 r_symmetry_nbtor_other 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1868 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing