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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12f/j
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.42 49.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.027 α = 90 b = 49.027 β = 90 c = 195.66 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 48.92 100 0.055 0.06 0.024 1 19.5 11.7 29166
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.74 1.77 99.7 1.476 1.636 0.696 0.635 1.5 10.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.74 42.495 29094 1498 99.959 0.224 0.2223 0.2569 0.2569 39.378
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.477 -0.238 -0.477 1.546
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.919 r_dihedral_angle_6_deg 15.113 r_dihedral_angle_3_deg 11.232 r_dihedral_angle_1_deg 8.385 r_lrange_it 6.143 r_lrange_other 6.139 r_scangle_it 3.909 r_scangle_other 3.908 r_mcangle_it 3.557 r_mcangle_other 3.556
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.919 r_dihedral_angle_6_deg 15.113 r_dihedral_angle_3_deg 11.232 r_dihedral_angle_1_deg 8.385 r_lrange_it 6.143 r_lrange_other 6.139 r_scangle_it 3.909 r_scangle_other 3.908 r_mcangle_it 3.557 r_mcangle_other 3.556 r_scbond_it 2.856 r_scbond_other 2.855 r_mcbond_it 2.726 r_mcbond_other 2.723 r_angle_refined_deg 2.104 r_angle_other_deg 0.734 r_symmetry_xyhbond_nbd_refined 0.238 r_nbd_refined 0.207 r_symmetry_nbd_other 0.199 r_nbtor_refined 0.181 r_nbd_other 0.133 r_xyhbond_nbd_refined 0.129 r_ncsr_local_group_1 0.116 r_chiral_restr 0.114 r_symmetry_nbd_refined 0.107 r_symmetry_nbtor_other 0.091 r_bond_refined_d 0.014 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1861 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing